CompChem-Database: compound details

CompChem-Database: details for selected entry

ChEBI186365_s0_p0 (100902)

Formula C₂₄H₄₈NO₉P

MW 525.62

InChIKey VRCJKDPTMPAFIX-CATZCVBWNA-N

Entry_Date 2023-11-01

Net_Charge 0

Number_Atoms 83

Number_Heavy_Atoms 35

Number_Rings 0

Number_Bonds 82

Rotat_Bonds 28

Unbranched_Chain 15

Chiral_Centers 3

ONatoms 10

HB_Donor 4

HB_Acceptor 5

OpenEye_HB_Donors 5

OpenEye_HB_Acceptors 6

Lipinski_HB_Donors 4

Lipinski_HB_Acceptors 10

Lipinski_Violations 1

XLogP3 0

XLogP 1.06

logP 4.882

PSA 167.58

MR 136.814

ABS 0.55

Solubility soluble

Aggregator Pass

PM7_Heat_of_Formation_kcal_per_mol -505.23508

PM7_Total_Energy_ev -6619.01034

PM7_Electronic_Energy_ev -67802.84564

PM7_Dipole_Debye 5.31221

PM7_Point_Group C1

PM7_HOMO_Energy_ev -9.645

PM7_LUMO_Energy_ev -0.447

PM7_COSMO_Area_square_ang 520.15

PM7_COSMO_Volue_cubic_ang 696.89

PM7_Electron_Affinity_ev 0.447

PM7_Ionization_Energy_ev 9.645

PM7_Energy_Gap_ev 9.198

PM7_Global_Hardness_ev 4.599

PM7_Global_Softness_ev 0.21743857360295715

PM7_Chemical_Potential_ev -5.046

PM7_Electronigativity_ev 5.046

PM7_Back_Donation_Energy_ev -1.14975

PM7_Electrophilicity_ev 2.7682230919765165

OPENEYE_Name (2~{S})-2-amino-3-[hydroxy-[(2~{R})-2-hydroxy-3-[(~{Z},2~{S})-2-methoxyheptadec-6-enoxy]propoxy]phosphoryl]oxy-propanoic acid

SMILES C(=CCCCC(COCC(COP(=O)(O)OCC(C(=O)O)N)O)OC)CCCCCCCCCC

Canonical_SMILES CCCCCCCCCC/C=CCCC[C@@H](COC[C@H](CO[P@](=O)(OC[C@@H](C(=O)O)N)O)O)OC

InChI 1/C24H48NO9P/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-22(31-2)19-32-17-21(26)18-33-35(29,30)34-20-23(25)24(27)28/h12-13,21-23,26H,3-11,14-20,25H2,1-2H3,(H,27,28)(H,29,30)/f/h27,29H

InChI_3D 1S/C24H48NO9P/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-22(31-2)19-32-17-21(26)18-33-35(29,30)34-20-23(25)24(27)28/h12-13,21-23,26H,3-11,14-20,25H2,1-2H3,(H,27,28)(H,29,30)/b13-12-/t21-,22+,23+/m1/s1

AuxInfo 1/1/N:4,5,8,11,13,15,16,14,12,9,6,1,2,7,10,17,20,21,19,18,24,23,22,3,25,29,26,28,27,30,31,32,34,33,35/E:(27,28)(29,30)/F:4,5,8,11,13,15,16,14,12,9,6,1,2,7,10,17,20,21,19,18,24,23,22,3,25,29,28,26,30,27,31,32,34,33,35/rA:83cCCCCCCCCCCCCCCCCCCCCCCCCNOOOOOOOOOPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH/rB:w1;;;;s1;s2;s4;s6;s7;s8;s9;s11;s12;s13;s14s15;s10;;;;;s3s18;s17s19;s20s21;s22;d3;;s3;s24;;s5s23;s19s20;s18;s21;d27s30s33s34;s1;s2;s4;s4;s4;s5;s5;s5;s6;s6;s7;s7;s8;s8;s9;s9;s10;s10;s11;s11;s12;s12;s13;s13;s14;s14;s15;s15;s16;s16;s17;s17;s18;s18;s19;s19;s20;s20;s21;s21;s22;s23;s24;s25;s25;s28;s29;s30;/rC:;-.5,-.866,0;-10.5,-3.866,0;-5,8.6603,0;-4.5,-2.866,0;-.5,.866,0;-1.5,-.866,0;-4.5,7.7942,0;-1,1.7321,0;-2.5,-.866,0;-4,6.9282,0;-1.5,2.5981,0;-3.5,6.0622,0;-2,3.4641,0;-3,5.1962,0;-2.5,4.3301,0;-3.5,-.866,0;-11.5,-2.866,0;-5.5,-.866,0;-7.5,-.866,0;-9.5,-.866,0;-11.5,-3.866,0;-4.5,-.866,0;-8.5,-.866,0;-11.5,-4.866,0;-10,-4.732,0;-12.5,-.866,0;-10,-3,0;-8.5,-1.866,0;-11.5,.134,0;-4.5,-1.866,0;-6.5,-.866,0;-11.5,-1.866,0;-10.5,-.866,0;-11.5,-.866,0;.5,0,0;-.25,-1.299,0;-5.433,8.4103,0;-4.567,8.9103,0;-5.25,9.0933,0;-5,-2.866,0;-4,-2.866,0;-4.5,-3.366,0;-.933,.616,0;-.067,1.116,0;-1.5,-1.366,0;-1.5,-.366,0;-4.067,8.0442,0;-4.933,7.5442,0;-1.433,1.4821,0;-.567,1.9821,0;-2.5,-1.366,0;-2.5,-.366,0;-3.567,7.1782,0;-4.433,6.6782,0;-1.933,2.3481,0;-1.067,2.8481,0;-3.067,6.3122,0;-3.933,5.8122,0;-2.433,3.2141,0;-1.567,3.7141,0;-2.567,5.4462,0;-3.433,4.9462,0;-2.933,4.0801,0;-2.067,4.5801,0;-3.5,-1.366,0;-3.5,-.366,0;-12,-2.866,0;-11,-2.866,0;-5.5,-1.366,0;-5.5,-.366,0;-7.5,-.366,0;-7.5,-1.366,0;-9.5,-1.366,0;-9.5,-.366,0;-12,-3.866,0;-4.5,-.366,0;-8.5,-.366,0;-11.067,-5.116,0;-11.933,-5.116,0;-9.5,-3,0;-8.067,-2.116,0;-11.933,.384,0;

Duplicates ChEBI186365_s0_p0

mol2_Path /CCDB/ChEBI/Database/Compound-0000150000-0000199999/Compound-0000186250-0000186499/ChEBI186365_s0_p0.mol2

pdbqt_Path /CCDB/ChEBI/Database/Compound-0000150000-0000199999/Compound-0000186250-0000186499/ChEBI186365_s0_p0.pdbqt

sdf_Path /CCDB/ChEBI/Database/Compound-0000150000-0000199999/Compound-0000186250-0000186499/ChEBI186365_s0_p0.sdf

Formula	C₂₄H₄₈NO₉P
MW	525.62
InChIKey	VRCJKDPTMPAFIX-CATZCVBWNA-N
Entry_Date	2023-11-01
Net_Charge	0
Number_Atoms	83
Number_Heavy_Atoms	35
Number_Rings	0
Number_Bonds	82
Rotat_Bonds	28
Unbranched_Chain	15
Chiral_Centers	3
ONatoms	10
HB_Donor	4
HB_Acceptor	5
OpenEye_HB_Donors	5
OpenEye_HB_Acceptors	6
Lipinski_HB_Donors	4
Lipinski_HB_Acceptors	10
Lipinski_Violations	1
XLogP3	0
XLogP	1.06
logP	4.882
PSA	167.58
MR	136.814
ABS	0.55
Solubility	soluble
Aggregator	Pass
PM7_Heat_of_Formation_kcal_per_mol	-505.23508
PM7_Total_Energy_ev	-6619.01034
PM7_Electronic_Energy_ev	-67802.84564
PM7_Dipole_Debye	5.31221
PM7_Point_Group	C1
PM7_HOMO_Energy_ev	-9.645
PM7_LUMO_Energy_ev	-0.447
PM7_COSMO_Area_square_ang	520.15
PM7_COSMO_Volue_cubic_ang	696.89
PM7_Electron_Affinity_ev	0.447
PM7_Ionization_Energy_ev	9.645
PM7_Energy_Gap_ev	9.198
PM7_Global_Hardness_ev	4.599
PM7_Global_Softness_ev	0.21743857360295715
PM7_Chemical_Potential_ev	-5.046
PM7_Electronigativity_ev	5.046
PM7_Back_Donation_Energy_ev	-1.14975
PM7_Electrophilicity_ev	2.7682230919765165
OPENEYE_Name	(2~{S})-2-amino-3-[hydroxy-[(2~{R})-2-hydroxy-3-[(~{Z},2~{S})-2-methoxyheptadec-6-enoxy]propoxy]phosphoryl]oxy-propanoic acid
SMILES	C(=CCCCC(COCC(COP(=O)(O)OCC(C(=O)O)N)O)OC)CCCCCCCCCC
Canonical_SMILES	CCCCCCCCCC/C=CCCC[C@@H](COC[C@H](CO[P@](=O)(OC[C@@H](C(=O)O)N)O)O)OC
InChI	1/C24H48NO9P/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-22(31-2)19-32-17-21(26)18-33-35(29,30)34-20-23(25)24(27)28/h12-13,21-23,26H,3-11,14-20,25H2,1-2H3,(H,27,28)(H,29,30)/f/h27,29H
InChI_3D	1S/C24H48NO9P/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-22(31-2)19-32-17-21(26)18-33-35(29,30)34-20-23(25)24(27)28/h12-13,21-23,26H,3-11,14-20,25H2,1-2H3,(H,27,28)(H,29,30)/b13-12-/t21-,22+,23+/m1/s1
AuxInfo	1/1/N:4,5,8,11,13,15,16,14,12,9,6,1,2,7,10,17,20,21,19,18,24,23,22,3,25,29,26,28,27,30,31,32,34,33,35/E:(27,28)(29,30)/F:4,5,8,11,13,15,16,14,12,9,6,1,2,7,10,17,20,21,19,18,24,23,22,3,25,29,28,26,30,27,31,32,34,33,35/rA:83cCCCCCCCCCCCCCCCCCCCCCCCCNOOOOOOOOOPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH/rB:w1;;;;s1;s2;s4;s6;s7;s8;s9;s11;s12;s13;s14s15;s10;;;;;s3s18;s17s19;s20s21;s22;d3;;s3;s24;;s5s23;s19s20;s18;s21;d27s30s33s34;s1;s2;s4;s4;s4;s5;s5;s5;s6;s6;s7;s7;s8;s8;s9;s9;s10;s10;s11;s11;s12;s12;s13;s13;s14;s14;s15;s15;s16;s16;s17;s17;s18;s18;s19;s19;s20;s20;s21;s21;s22;s23;s24;s25;s25;s28;s29;s30;/rC:;-.5,-.866,0;-10.5,-3.866,0;-5,8.6603,0;-4.5,-2.866,0;-.5,.866,0;-1.5,-.866,0;-4.5,7.7942,0;-1,1.7321,0;-2.5,-.866,0;-4,6.9282,0;-1.5,2.5981,0;-3.5,6.0622,0;-2,3.4641,0;-3,5.1962,0;-2.5,4.3301,0;-3.5,-.866,0;-11.5,-2.866,0;-5.5,-.866,0;-7.5,-.866,0;-9.5,-.866,0;-11.5,-3.866,0;-4.5,-.866,0;-8.5,-.866,0;-11.5,-4.866,0;-10,-4.732,0;-12.5,-.866,0;-10,-3,0;-8.5,-1.866,0;-11.5,.134,0;-4.5,-1.866,0;-6.5,-.866,0;-11.5,-1.866,0;-10.5,-.866,0;-11.5,-.866,0;.5,0,0;-.25,-1.299,0;-5.433,8.4103,0;-4.567,8.9103,0;-5.25,9.0933,0;-5,-2.866,0;-4,-2.866,0;-4.5,-3.366,0;-.933,.616,0;-.067,1.116,0;-1.5,-1.366,0;-1.5,-.366,0;-4.067,8.0442,0;-4.933,7.5442,0;-1.433,1.4821,0;-.567,1.9821,0;-2.5,-1.366,0;-2.5,-.366,0;-3.567,7.1782,0;-4.433,6.6782,0;-1.933,2.3481,0;-1.067,2.8481,0;-3.067,6.3122,0;-3.933,5.8122,0;-2.433,3.2141,0;-1.567,3.7141,0;-2.567,5.4462,0;-3.433,4.9462,0;-2.933,4.0801,0;-2.067,4.5801,0;-3.5,-1.366,0;-3.5,-.366,0;-12,-2.866,0;-11,-2.866,0;-5.5,-1.366,0;-5.5,-.366,0;-7.5,-.366,0;-7.5,-1.366,0;-9.5,-1.366,0;-9.5,-.366,0;-12,-3.866,0;-4.5,-.366,0;-8.5,-.366,0;-11.067,-5.116,0;-11.933,-5.116,0;-9.5,-3,0;-8.067,-2.116,0;-11.933,.384,0;
Duplicates	ChEBI186365_s0_p0
mol2_Path	/CCDB/ChEBI/Database/Compound-0000150000-0000199999/Compound-0000186250-0000186499/ChEBI186365_s0_p0.mol2
pdbqt_Path	/CCDB/ChEBI/Database/Compound-0000150000-0000199999/Compound-0000186250-0000186499/ChEBI186365_s0_p0.pdbqt
sdf_Path	/CCDB/ChEBI/Database/Compound-0000150000-0000199999/Compound-0000186250-0000186499/ChEBI186365_s0_p0.sdf