CompChem-Database: compound details

CompChem-Database: details for selected entry

ChEBI17010_p0_t0 (6070)

Formula C₁₄H₁₉N₅O₆S

MW 385.39

InChIKey VNPWVMVYUSNFAW-PDJAEHLQNA-N

Entry_Date 2023-11-01

Net_Charge 0

Number_Atoms 45

Number_Heavy_Atoms 26

Number_Rings 3

Number_Bonds 47

Rotat_Bonds 11

Unbranched_Chain 4

Chiral_Centers 5

ONatoms 11

HB_Donor 5

HB_Acceptor 8

OpenEye_HB_Donors 6

OpenEye_HB_Acceptors 8

Lipinski_HB_Donors 5

Lipinski_HB_Acceptors 11

Lipinski_Violations 1

XLogP3 0

XLogP -5.17

logP -0.6134

PSA 202.14

MR 90.4288

ABS 0.55

Solubility very

Aggregator Pass

PM7_Heat_of_Formation_kcal_per_mol -170.35971

PM7_Total_Energy_ev -4854.45203

PM7_Electronic_Energy_ev -37431.83446

PM7_Dipole_Debye 2.8197

PM7_Point_Group C1

PM7_HOMO_Energy_ev -8.962

PM7_LUMO_Energy_ev -1.136

PM7_COSMO_Area_square_ang 357.89

PM7_COSMO_Volue_cubic_ang 422.85

PM7_Electron_Affinity_ev 1.136

PM7_Ionization_Energy_ev 8.962

PM7_Energy_Gap_ev 7.826

PM7_Global_Hardness_ev 3.913

PM7_Global_Softness_ev 0.2555583950932788

PM7_Chemical_Potential_ev -5.049

PM7_Electronigativity_ev 5.049

PM7_Back_Donation_Energy_ev -0.97825

PM7_Electrophilicity_ev 3.257398543317148

OPENEYE_Name (2~{S})-2-amino-4-[[(2~{S},3~{S},4~{R},5~{R})-3,4-dihydroxy-5-(6-hydroxypurin-9-yl)tetrahydrofuran-2-yl]methylsulfanyl]butanoic acid

SMILES c1nc2c(c(n1)O)ncn2C3C(C(C(O3)CSCCC(C(=O)O)N)O)O

Canonical_SMILES OC(=O)[C@H](CCSC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cnc2c1ncnc2O)N

InChI 1/C14H19N5O6S/c15-6(14(23)24)1-2-26-3-7-9(20)10(21)13(25-7)19-5-18-8-11(19)16-4-17-12(8)22/h4-7,9-10,13,20-21H,1-3,15H2,(H,23,24)(H,16,17,22)/f/h22-23H

InChI_3D 1S/C14H19N5O6S/c15-6(14(23)24)1-2-26-3-7-9(20)10(21)13(25-7)19-5-18-8-11(19)16-4-17-12(8)22/h4-7,9-10,13,20-21H,1-3,15H2,(H,23,24)(H,16,17,22)/t6-,7+,9+,10+,13+/m0/s1

AuxInfo 1/1/N:12,13,11,1,2,14,9,3,7,8,4,5,10,6,19,15,16,17,18,24,25,22,20,23,21,26/E:(23,24)/F:12,13,11,1,2,14,9,3,7,8,4,5,10,6,19,15,16,17,18,24,25,22,23,20,21,26/rA:45cCCCCCCCCCCCCCCNNNNNOOOOOOSHHHHHHHHHHHHHHHHHHH/rB:;;d3;s3;;;s7;s7;s8;s9;;s12;s6s12;d1s4;s1d5;d2s3;s2s4s10;s14;d6;s9s10;s5;s6;s7;s8;s11s13;s1;s2;s7;s8;s9;s10;s11;s11;s12;s12;s13;s13;s14;s19;s19;s22;s23;s24;s25;/rC:-.868,-1.5137,0;2.4178,-1.0115,0;.868,-.5079,0;.868,-1.515,0;;-4.3696,-1.8218,0;1.965,-4.3904,0;2.6343,-3.6455,0;1.0521,-3.9822,0;2.1348,-2.7774,0;-.6605,-3.6225,0;-3.5965,-3.006,0;-2.6178,-3.2115,0;-4.5751,-2.8004,0;0,-2.0116,0;-.868,-.5079,0;1.8258,-.1969,0;1.8258,-1.8263,0;-5.5538,-2.5949,0;-3.4193,-1.5105,0;1.1523,-2.9869,0;0,1,0;-5.1144,-1.1545,0;3.3809,-5.4188,0;4.0507,-2.6177,0;-1.6392,-3.417,0;-1.3007,-1.7643,0;2.9178,-1.0115,0;1.7146,-4.8232,0;2.969,-4.017,0;.8978,-4.4578,0;2.5917,-2.5743,0;-.7633,-4.1119,0;-.5577,-3.1332,0;-3.6992,-3.4953,0;-3.4937,-2.5166,0;-2.515,-2.7222,0;-2.7206,-3.7008,0;-4.6779,-3.2898,0;-5.8874,-2.9673,0;-5.7094,-2.1198,0;-.433,1.25,0;-5.0116,-.6652,0;3.3287,-5.9161,0;4.5074,-2.8213,0;

Duplicates ChEBI17010_p0_t0

mol2_Path /CCDB/ChEBI/Database/Compound-0000000000-0000049999/Compound-0000017000-0000017249/ChEBI17010_p0_t0.mol2

pdbqt_Path /CCDB/ChEBI/Database/Compound-0000000000-0000049999/Compound-0000017000-0000017249/ChEBI17010_p0_t0.pdbqt

sdf_Path /CCDB/ChEBI/Database/Compound-0000000000-0000049999/Compound-0000017000-0000017249/ChEBI17010_p0_t0.sdf

Formula	C₁₄H₁₉N₅O₆S
MW	385.39
InChIKey	VNPWVMVYUSNFAW-PDJAEHLQNA-N
Entry_Date	2023-11-01
Net_Charge	0
Number_Atoms	45
Number_Heavy_Atoms	26
Number_Rings	3
Number_Bonds	47
Rotat_Bonds	11
Unbranched_Chain	4
Chiral_Centers	5
ONatoms	11
HB_Donor	5
HB_Acceptor	8
OpenEye_HB_Donors	6
OpenEye_HB_Acceptors	8
Lipinski_HB_Donors	5
Lipinski_HB_Acceptors	11
Lipinski_Violations	1
XLogP3	0
XLogP	-5.17
logP	-0.6134
PSA	202.14
MR	90.4288
ABS	0.55
Solubility	very
Aggregator	Pass
PM7_Heat_of_Formation_kcal_per_mol	-170.35971
PM7_Total_Energy_ev	-4854.45203
PM7_Electronic_Energy_ev	-37431.83446
PM7_Dipole_Debye	2.8197
PM7_Point_Group	C1
PM7_HOMO_Energy_ev	-8.962
PM7_LUMO_Energy_ev	-1.136
PM7_COSMO_Area_square_ang	357.89
PM7_COSMO_Volue_cubic_ang	422.85
PM7_Electron_Affinity_ev	1.136
PM7_Ionization_Energy_ev	8.962
PM7_Energy_Gap_ev	7.826
PM7_Global_Hardness_ev	3.913
PM7_Global_Softness_ev	0.2555583950932788
PM7_Chemical_Potential_ev	-5.049
PM7_Electronigativity_ev	5.049
PM7_Back_Donation_Energy_ev	-0.97825
PM7_Electrophilicity_ev	3.257398543317148
OPENEYE_Name	(2~{S})-2-amino-4-[[(2~{S},3~{S},4~{R},5~{R})-3,4-dihydroxy-5-(6-hydroxypurin-9-yl)tetrahydrofuran-2-yl]methylsulfanyl]butanoic acid
SMILES	c1nc2c(c(n1)O)ncn2C3C(C(C(O3)CSCCC(C(=O)O)N)O)O
Canonical_SMILES	OC(=O)[C@H](CCSC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cnc2c1ncnc2O)N
InChI	1/C14H19N5O6S/c15-6(14(23)24)1-2-26-3-7-9(20)10(21)13(25-7)19-5-18-8-11(19)16-4-17-12(8)22/h4-7,9-10,13,20-21H,1-3,15H2,(H,23,24)(H,16,17,22)/f/h22-23H
InChI_3D	1S/C14H19N5O6S/c15-6(14(23)24)1-2-26-3-7-9(20)10(21)13(25-7)19-5-18-8-11(19)16-4-17-12(8)22/h4-7,9-10,13,20-21H,1-3,15H2,(H,23,24)(H,16,17,22)/t6-,7+,9+,10+,13+/m0/s1
AuxInfo	1/1/N:12,13,11,1,2,14,9,3,7,8,4,5,10,6,19,15,16,17,18,24,25,22,20,23,21,26/E:(23,24)/F:12,13,11,1,2,14,9,3,7,8,4,5,10,6,19,15,16,17,18,24,25,22,23,20,21,26/rA:45cCCCCCCCCCCCCCCNNNNNOOOOOOSHHHHHHHHHHHHHHHHHHH/rB:;;d3;s3;;;s7;s7;s8;s9;;s12;s6s12;d1s4;s1d5;d2s3;s2s4s10;s14;d6;s9s10;s5;s6;s7;s8;s11s13;s1;s2;s7;s8;s9;s10;s11;s11;s12;s12;s13;s13;s14;s19;s19;s22;s23;s24;s25;/rC:-.868,-1.5137,0;2.4178,-1.0115,0;.868,-.5079,0;.868,-1.515,0;;-4.3696,-1.8218,0;1.965,-4.3904,0;2.6343,-3.6455,0;1.0521,-3.9822,0;2.1348,-2.7774,0;-.6605,-3.6225,0;-3.5965,-3.006,0;-2.6178,-3.2115,0;-4.5751,-2.8004,0;0,-2.0116,0;-.868,-.5079,0;1.8258,-.1969,0;1.8258,-1.8263,0;-5.5538,-2.5949,0;-3.4193,-1.5105,0;1.1523,-2.9869,0;0,1,0;-5.1144,-1.1545,0;3.3809,-5.4188,0;4.0507,-2.6177,0;-1.6392,-3.417,0;-1.3007,-1.7643,0;2.9178,-1.0115,0;1.7146,-4.8232,0;2.969,-4.017,0;.8978,-4.4578,0;2.5917,-2.5743,0;-.7633,-4.1119,0;-.5577,-3.1332,0;-3.6992,-3.4953,0;-3.4937,-2.5166,0;-2.515,-2.7222,0;-2.7206,-3.7008,0;-4.6779,-3.2898,0;-5.8874,-2.9673,0;-5.7094,-2.1198,0;-.433,1.25,0;-5.0116,-.6652,0;3.3287,-5.9161,0;4.5074,-2.8213,0;
Duplicates	ChEBI17010_p0_t0
mol2_Path	/CCDB/ChEBI/Database/Compound-0000000000-0000049999/Compound-0000017000-0000017249/ChEBI17010_p0_t0.mol2
pdbqt_Path	/CCDB/ChEBI/Database/Compound-0000000000-0000049999/Compound-0000017000-0000017249/ChEBI17010_p0_t0.pdbqt
sdf_Path	/CCDB/ChEBI/Database/Compound-0000000000-0000049999/Compound-0000017000-0000017249/ChEBI17010_p0_t0.sdf